FormatValue

Enum FormatValue 

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pub enum FormatValue {
    Absent,
    Missing,
    Int(i32),
    Float(f32),
    String(String),
    Array(Vec<FormatValue>),
    PerSample(Vec<FormatValue>),
    Genotype(Genotype),
}
Expand description

Represents a value from a FORMAT field in a VCF record.

FORMAT fields contain per-sample data and can hold integers, floats, or strings. Values can be scalar, array-valued, or organized per-sample.

  • Absent: The tag is not present in the record
  • Missing: The tag is present but has no value (. in VCF)
  • Int: A single integer value
  • Float: A single float value
  • String: A single string value
  • Array: Multiple values (for Number != 1 fields)
  • PerSample: A vector of values, one per sample in the VCF

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Absent

The FORMAT tag is not present in the record.

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Missing

The FORMAT tag is present but has a missing value (.).

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Int(i32)

A single integer value.

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Float(f32)

A single float value.

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String(String)

A single string value.

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Array(Vec<FormatValue>)

An array of values (for Number != 1 fields).

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PerSample(Vec<FormatValue>)

Per-sample values, one entry per sample in the VCF.

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Genotype(Genotype)

A parsed genotype value (for the GT field).

Trait Implementations§

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impl Clone for FormatValue

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fn clone(&self) -> FormatValue

Returns a duplicate of the value. Read more
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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for FormatValue

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl PartialEq for FormatValue

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fn eq(&self, other: &FormatValue) -> bool

Tests for self and other values to be equal, and is used by ==.
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fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.
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impl StructuralPartialEq for FormatValue

Auto Trait Implementations§

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
Performs copy-assignment from self to dest. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> ToOwned for T
where T: Clone,

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type Owned = T

The resulting type after obtaining ownership.
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fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more
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fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more
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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = Infallible

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.
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impl<T> ErasedDestructor for T
where T: 'static,