Index

B

barplot_cluster() (in module crystal.plot)

bump_cluster() (in module crystal.crystal)

C

CountFeature (class in crystal.crystal) crystal.crystal (module) crystal.evaluate (module)

crystal.plot (module) crystal.regions (module) crystal.simulate (module)

D

distance() (crystal.crystal.Feature method)

E

evaluate() (in module crystal.evaluate)

F

factorplot_cluster() (in module crystal.plot)

Feature (class in crystal.crystal)

G

gee_cluster() (in module crystal.crystal)

I

is_correlated() (crystal.crystal.Feature method)

M

mixed_model_cluster() (in module crystal.crystal)

model_clusters() (in module crystal.crystal)

N

nb_cluster() (in module crystal.crystal)

O

ols_cluster_robust() (in module crystal.crystal)

one_cluster() (in module crystal.crystal)

P

plot_cluster() (in module crystal.plot) plot_roc() (in module crystal.evaluate)

plot_times() (in module crystal.evaluate)

R

region_cluster_gen() (in module crystal.regions)

rr_cluster() (in module crystal.simulate)

S

simulate_cluster() (in module crystal.simulate) simulate_regions() (in module crystal.simulate)

spaghetti_plot() (in module crystal.plot)

W

wrapper() (in module crystal.crystal) write_modeled_regions() (in module crystal.evaluate)

write_region_bed() (in module crystal.evaluate)

Z

zscore_cluster() (in module crystal.crystal)